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Module 3: Staff time apportionment

Options from timesheets to estimate-based allocation, what each looks like under review, the cost base the percentage is applied to, and how to document the method.

In-House Finance Team ProgramLast reviewed 2 October 2026

Staff costs are usually the largest line in a claim and the first one a reviewer tests. After this module you will be able to decide whose time is in scope, choose an apportionment method that fits the size of your team and the risk in the claim, apply it to the right cost base, and document it so that a reviewer can follow it from the payroll ledger to the figure in the claim.

What this module covers

  • Whose time counts: people directly engaged, technical supervision and support, and the roles commonly excluded.
  • Four methods, from timesheets kept at the time to role-based estimates, and how each reads under review.
  • The cost base the percentage is applied to.
  • The method memo: documenting the apportionment so it survives a change of staff and a later review.

Whose time counts

Every scheme starts with the people directly engaged in the work done to resolve the uncertainty: designing experiments, building and testing, analysing results and writing up what was learned. Several schemes also bring in direct technical supervision and support, and most exclude general management, administration and clerical work. The boundary differs, and the country rows carry each scheme's wording. The method is the same everywhere: build a role list before you touch the numbers.

Role groupExamplesTypical treatmentWhat to record
Hands-on technical staffEngineers, developers, scientistsIn scope for the share of time on the eligible projectsTime by project code, or the method used to estimate it
Technical supervisionTeam leads planning and directing the workIn scope for time spent directly on the technical work in several schemes; general management excludedWhich projects they directed, with plans, reviews and design decisions as evidence
Technical supportLab technicians, machinists making test parts, data preparationIn scope in some schemes where the support is direct; general administrative support excludedThe tasks that supported the eligible work
General management and administrationManaging director, finance, HR, salesExcluded in most schemes unless the person also did technical workA statement that they were excluded, or the technical share with evidence

Four methods and how each reads under review

Several tax authorities state expressly that they expect timesheets or another reasonable method supported by records, and that they test how allocations were made. The methods below run from strongest to weakest. Mixed approaches are normal: timesheets for the core team, a documented estimate for the few around it.

MethodWhat it needsHow it reads under reviewTypical failure
Timesheets kept at the time, by project and taskHours against project codes at least monthly, manager approvedStrongest: a record made at the time that ties to the project codes in the ledgerCodes too coarse to separate eligible from routine work; no approval; entries filled in at year end
Periodic samplingRepresentative weeks or sprints recorded and extrapolatedAcceptable where the sample is documented and representative and the extrapolation explainedSample taken in an unrepresentative period; no record of why it was chosen
Reconstruction from project artefactsSprint boards, lab notebooks, commit history, calendars, test logs tied to people and datesCredible where the artefacts were created during the work and name the people involvedArtefacts show the project existed but not who worked on it or for how long
Role-based estimateA percentage per role agreed with managers, ideally during the yearWeakest alone; workable for a small team where other records corroborate itRound numbers, 100 percent for everyone, prepared after the year with no supporting record

Whatever the method, a reviewer asks: who did the work and in what role; what share of their time went to it and how that was measured; and what cost the share was applied to. Staff costs get reduced where an allocation cannot answer all three.

The cost base

The percentage is applied to the scheme's definition of staff cost, not to the payroll total. Definitions differ on employer contributions, bonuses, reimbursed expenses, benefits in kind, dividends and directors' fees, and some cap the pay of owner managers. Work person by person:

  1. Start from gross pay per person in the payroll ledger for the claim period.
  2. Remove the items the scheme excludes and add the employer contributions the scheme includes.
  3. Apply any cap the scheme sets for particular people.
  4. Multiply by that person's apportioned share.
  5. Sum, and reconcile the starting figures back to the payroll ledger and the accounts.

The United States row below records a threshold rule for people substantially all engaged in the work; do not generalise it to other countries.

The method memo

The memo is short, written while the method is applied, and kept with each year's claim file. It records the scope (people and period); the role list and the treatment of each group; the method for each group and why; the data sources; how gaps, joiners and leavers were handled; who approved the allocations; the reconciliation to the payroll ledger; and a change log for anything that differs from the previous year. If the company moves from estimates to timesheets during a year, keep both and show where they join. Consistency year to year is itself evidence; an unexplained change in method or percentages invites a question.

Illustrative example

Illustrative example. Harbour Robotics Ltd, a hypothetical company, has twelve technical staff with payroll of 1,200,000 for the year, including the employer contributions its scheme allows. Eight engineers record time against project codes; their timesheets show 55 percent of hours on the two eligible projects, so 55 percent of their 800,000 cost, or 440,000, is apportioned. Two technical leads keep no timesheets; their project plans, design reviews and meeting records support 40 percent of their 240,000, or 96,000. One technician is allocated 50 percent of 60,000, or 30,000, on a role-based estimate corroborated by work orders for test rigs. The operations manager, at 100,000, is excluded and the memo says so. Apportioned staff cost is 566,000 of 1,200,000. The memo records each method, the reconciliation to payroll and the approver. The benefit is calculated on 566,000 at that country's rate after any scheme specific adjustment to the cost base.

Across the seven countries

Each row uses that country's own wording; the linked page sets out the staff cost definition and the records expected.

CountryStaff costs and apportionmentDetail
United StatesQualified services means engaging in qualified research or in its direct supervision or direct support. If substantially all, meaning 80 percent or more, of an employee's services are qualified services, all of the wages are treated as qualified wages. The Audit Techniques Guide directs examiners to test how time allocations were made and what records support them.Qualified research expenses
United KingdomStaffing costs comprise earnings, employer Class 1 National Insurance contributions and employer pension contributions for directors and employees directly and actively engaged in R&D, apportioned where only partly so engaged. Managerial staff qualify to the extent of time spent directly and actively engaged, for example planning and supervising the technical work; general management of the company does not.Eligible expenditure
IrelandStaff costs are apportioned according to the proportion of time spent on qualifying R&D activities, supported by records such as timesheets; time spent on general management, administration and non-R&D supervision is not qualifying expenditure.Eligible expenditure
CanadaSalary or wages of employees directly engaged in SR&ED qualify for the portion of time so engaged. Directly engaged means hands-on involvement, including performing experiments and analysis, directly supervising the work and technical documentation, but not general management, administrative or clerical functions. The portion claimed should be supported by time records or another reasonable method with documentary support.Eligible expenditure
AustraliaSalary expenditure must be apportioned on a reasonable basis between R&D and non-R&D activities, and contemporaneous records such as timesheets are expected to support the apportionment.Eligible expenditure
New ZealandSalary or wages and other employee remuneration, including employer superannuation contributions, to the extent the employee performs R&D activities. Employee costs are expected to be apportioned using timesheets or another reasonable and consistent method supported by records.Eligible expenditure
SingaporeStaff costs comprise salaries, bonuses, allowances and employer CPF contributions of employees directly engaged in the R&D, excluding directors' fees, apportioned where the employee is not wholly engaged. Staff costs claimed are expected to be supported by records of the time spent on R&D, such as timesheets or project allocation records.Eligible expenditure

Where to go next

Self-check questions

Answer each question, then open it to compare.

What three questions does a reviewer ask of a staff cost figure?
Who did the work and in what role; what share of their time went to the work done to resolve the uncertainty and how that share was measured; and what cost base the share was applied to and whether it reconciles to payroll.
A company has no timesheets for the year that has just ended. What are its options, from strongest to weakest?
Reconstruct from project artefacts (sprint records, lab notebooks, calendars, commit history) that tie people to dates and projects; sample documented, representative periods and extrapolate; or use role-based estimates agreed with managers and corroborated by other records. Record which method was used and why, and start timesheets now.
Name three patterns in a staff allocation that invite questions under review.
100 percent allocations for senior management or company directors; identical percentages across a whole team; percentages that never change from one year to the next; and round estimates prepared after the period with nothing contemporaneous behind them.
What does the apportionment method memo contain?
The scope (people and period), the role list, the method used for each group, the data sources, how gaps and leavers were handled, who approved the allocations, the reconciliation to the payroll ledger and a change log from the previous year.
Why apply the percentage to a scheme specific cost base rather than to total payroll?
Each scheme defines staff cost differently. Some include employer pension or social contributions and bonuses, others exclude benefits in kind, dividends or directors fees, and some cap the pay of owner managers. Applying a percentage to total payroll overstates or understates the claim.

Official sources

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Educational content only, not tax advice. See the disclaimer.